Update to yacman 0.8.0, fixing references to internal config attributes.
Add documentation and clarity for the shell_prompt option
Fixed bug with relative crate root folders.
[0.7.1] -- 2021-03-03
Fixed bug in bulker reload.
[0.7.0] -- 2021-03-02
EXPERIMENTAL: Added bulker cwl2man to create a bulker manifest from a CWL file.
BREAKING CHANGE: Renamed the bulker load arguments: the --manifest short arg changed from -f to -m; --force changed from -r to -f. This is to be more consistent with the names. Since I doubt many people are using this in script, I don't think this will break much, if anything.
Added new option for -r, --recurse to bulker load, which recursively re-loads all imported manifests.
Added new bulker reload command, that reloads all manifests.
Added bulker envvars, which allows you to list, add (-a VAR), or remove (-r VAR) environment variables to the bulker config from the CLI.
Added bulker unload to remove a loaded manifest.
[0.6.0] -- 2020-07-10
Allowed bulker run to gracefully handle interrupts, passing them to the child process.
Implemented -p, which doesn't update prompts, for compatibility with jupyter notebooks
Fixed a bug with using the default config
Added capability to exclude volumes from specific containers
Fixed a bug with singularity exec template
Dropped support for Python 2
[0.5.0] -- 2020-04-08
Added bulker shell prompts for both normal and strict modes
Added custom shell prompts (experimental!)
Added bulker inspect
Added env variables $BULKERCRATE, BULKERPROMPT, and BULKERSHELL.
Changed the behavior of normal mode to set bulker path after calling the rcfile.
Changed built-in singularity template to accommodate singularity version 3
Changed method for accommodating zshell.
Removed support for python 3.4
[0.4.0] -- 2019-12-16
Better error message if user tries to activate a crate with no crates loaded.
Uses default shell by default, and can be specified with the shell_path in config.
Singularity will now automatically pull new images without requiring -b on load
Added new attributes to disable user or network maps (no_user and no_network).
Revamped the templates to fix a few small convenience issues
Switch to using symlinks instead of wrapper scripts for host executables
require latest yacman
[0.3.0] -- 2019-10-21
Renamed 'dockerargs' to 'docker_args' and 'singularityargs' to
'singularity_args', which is more consistent with other attribute styles.
Implemented prototype container entry system, whereby you may type _command
after activating a crate to enter an interactive shell of the container that
is used to run that command.
Initial implementation of 'imports' domain capability.
Added the tool_args bulker config section for host-specific and
[0.2.4] -- 2019-10-11
Fixed a bug with file locks that prevented activating environments
Relative paths for singularity images in the bulker config are now made
relative to the config file, rather than to the working directory.
[0.2.3] -- 2019-10-08
Upgraded yacman to protect against two bulker processes writing to the config
file at the same time.
[0.2.2] -- 2019-09-19
Fixed a bug with using the built-in config file
[0.2.1] -- 2019-09-12
Fix problem with python2 compatibility
Init now copies over templates, which are relative to the config file. This
makes it easier to share a bulker configuration in a shared computing
update registry to hub.bulker.io.
[0.2.0] -- 2019-08-20
Major changes to the registry path treatment to accommodate tags
Local/remote manifests are now loaded with -f
Full registry paths are now required for load, run, and activate
Config format includes a new hierarchical level for crate tags
Add host_commands functionality (useful for --strict crates)
[0.1.2] -- 2019-08-14
Fix a bug with compatibility of load from registry for older pythons
[0.1.1] -- 2019-08-13
Allows activate to return the export command, to enable bulker-activate
shell approach (see tips)
Implements initial bulker registry (file server version)
Improved argument parsing for bulker run
[0.1.0] -- 2019-08-07
Add bulker run to execute a command in a crate
bulker init will now guess docker or singularity
activate and run commands now accept a comma-separated list of crates
[0.0.2] -- 2019-08-01
No longer require -m for bulker load
Add support for singularity
Allow choosing container engine with bulker init -e
Add -b option to build/pull containers with bulker load
[0.0.1] -- 2019-08-01
First public bulker release
From here you can search these documents. Enter
your search terms below.